"Late season flintlock hunters are permitted to take an antlered deer or an antlerless deer anywhere in the state with their unused antlered deer tag." - From page 29 of the regs
"Limit: One legal antlered deer per license year. One antlerless deer
with each valid WMU specific antlerless license." - From page 42 of the regs
Absolutely nothing in there that implies you can use your antlered tag on an antlerless deer in late archery, or any other season, other than late flintlock.